Software Releases

Image

Software developed within the Row Fogo Centre to facilitate neuroimaging analysis.

IMPORTANT NOTE: You are free to use developed by us tools for research purposes. Hovewer, please include adequate citations and acknowledgments whenever you present or publish results that are based on it.

Probabilistic Deep Learning with Adversarial Training and Volume Interval Estimation - Better Ways to Perform and Evaluate Predictive Models for White Matter Hyperintensities Evolution

Authors: Muhammad Febrian Rachmadi (RIKEN Center for Brain Science, Japan)

Topics: deep-neural-networks deep-learning brain-mri wmh-segmentation wmhs

GitHub link (external website)

Algorithm developed as a part of collaborathion between RIKEN Center for Brain Science (Japan), School of Informatics, and the Row Fogo Centre fore Research into Ageing and the Brain, at The University of Edinburgh (UK).

Read more about RIKEN collaboration

Ischaemic Stroke Lesions Segmentation using Convolutional Neural Networks 

Authors: Carlos Uziel Perez Malla MSc. work supervised by Maria del C. Valdés Hernandez and Taku Komura

GitHub link (external website)

Limited-One Time Sample-Irregularity Age Map for GPU (LOTS-IAM GPU)

Authors: Febrian Rachmadi, Maria del C. Valdés Hernandez and Taku Komura

GitHub link (external website)

Dilated Saliency UNet

Authors: Yunhee Jeong MSc work supervised by M. Febrian Rachmadi, Maria del C. Valdés Hernández and Taku Komura

GitHub link (external website)

Dynamic Brain MRI Analysis 

Authors: José Bernal Moyano and Maria del C. Valdés Hernández

GitHub link (external website)

Functions for processing DCE-MRI data and performing simulations

Author: Dr Michael Thrippleton

GitHub link (external website)

Fit T2 or T2 Star MRI data and create parameters maps

Author: Dr Michael Thrippleton

GitHub link (external website)

Functions for processing MT Saturation images

Author: Dr Michael Thrippleton

GitHub link (external website)  

Process T1 mapping using DESPOT1-HIFI or Variable Flip Angle methods

Author: Dr Michael Thrippleton

GitHub link (external website)   

T1 mapping using IRSE method

Author: Dr Michael Thrippleton

GitHub link (external website)  

See also

Row Fogo Centre - Our research 

Row Fogo Centre Small Vessel Disease Research- Edinburgh Research Explorer (external link for open access research outputs and information about projects)

Vascular Assessment and Measurement Platform for Images of the REtina (VAMPIRE) algorithms

Algorithms developed within the VAMPIRE project, related to quantification of retinal vessel properties.

VAMPIRE Project website - Tools (external link)