Imaging rating tool, protocols and repository, software tools, and radiology review tools. Freely available, downloadable software, mostly developed locally at the University of Edinburgh Ageing Brain Normal Ageing Brain Rating Tools Document Ageing Brain Template (129.94 KB / PDF) Document Atrophy Ranking (179.47 KB / PDF) Document Ageing Brain Paper (316.36 KB / PDF) Brain Imaging of Normal Subjects (BRAINS) software tool Document Age-specific MR atlases from young adults to the very elderly (475.45 KB / PDF) Human brain atlases across the lifespan – Anatomical Segmentations, 1990-2016 [dataset]https://datashare.ed.ac.uk/handle/10283/3890 DICOM image anonymization: DICOM Confidential Downloadable DICOM image anonymization: DICOM Confidential software toolsAnonymization of DICOM images: DICOM Confidential software tool DICOM Confidential download | SourceForge.net Functional Imaging Functional MR (fMRI): adaptive thresholding software toolsMatlab ScriptsElectro-encephalography (EEG) statistical analysis software tool LIMO EEG toolbox: for statistical analysis of EEG data across the whole dataspace (EEGLAB compatible)Robust correlation software tools The Robust Correlation Toolbox is a free collection of MATLAB functions allowing:Visualization of data in univariate & bivariate spaceChecking assumptions of normality & homoscedasticityComputation of Pearson's & Spearman's coefficients, percentage bend & skipped correlations with bootstrapped confidence intervals Microbleeds / microhaemorrhages Brain observer microbleed scale (BOMBS) rating tools Document Brain Observer Microbleed Scale (BOMBS) User Guide (1.85 MB / PDF) Document Brain Observer Microbleed Scale (BOMBS) Form (129.52 KB / PDF) Document Development of BOMBS (523.25 KB / PDF) Segmentation of microbleeds & mineral deposits software tool Document Guidelines for segmentation of microbleeds & mineral deposits (482.92 KB / PDF) Multi-centre Studies Multi-Centre StudiesEdinburgh Imaging publication on Guidelines & Practical Tips for accurate & reproducible imaging endpoints & data sharingMetrics for quality control of results from super-resolution machine-learning algorithms – Data extracted from publications in the period 2017- May 2021, 2017-2021 [dataset]https://datashare.ed.ac.uk/handle/10283/3933 Perivascular Spaces Enlarged Perivascular Spaces (EPVS) rating tools Document Quantifying Enlarge Perivascular Spaces (EPVS) (1.53 MB / PDF) Digital human brain atlases software toolhttps://datashare.ed.ac.uk/handle/10283/2216 Quantitative Magnetic Resonance Dynamic contrast enhanced magnetic resonance (DCE-MR) software toolPatlak modelling of subtle Blood Brain Barrier (BBB) leakageMapping T1 (volumetric) software toolDESPOT1-HIFI or variable flip angleMapping T1 software toolhttps://github.com/mjt320/SEPALhttps://github.com/mjt320Mapping T2/T2* software toolhttps://github.com/mjt320/T2Star Retinal Imaging: VAMPIRE Vascular assessment & measurement platform for images of the retina (VAMPIRE) – analysis softwareSemi-automatic software to measure fundus images (fundus camera, SLO & Optos ultra-widefield SLO) are also available.For further info, please contact:Dr Tom MacGillivraySenior Research Fellow & Image Analysis Core Laboratory ManagerCentre for Clinical Brain SciencesClinical Research Imaging CentreWellcome Trust Clinical Research FacilityContact detailsWebsite: Profile on the University of EdinburghWebsite: Profile on Edinburgh Research ExplorerWebsite: Clinical Research Imaging Centre Image AnalysisWork: +44 (0)131 242 7756Email: T.J.MacGillivray@ed.ac.uk Segmentation Stroke White Matter Lesions (WML) This article was published on 2025-07-21
